基于生物信息学及分子对接研究益气调腑汤治疗大肠癌的潜在分子机制
作者:
作者单位:

1.湖南省肿瘤医院,湖南 长沙,410013;2.湖南中医药大学,湖南 长沙,410208;3.湖南省中医药研究院, 湖南 长沙,410006

作者简介:

李显晶,男,硕士研究生,研究方向为中西医结合防治恶性肿瘤。

通讯作者:

宋程,男,博士,研究生导师,研究方向为中西医结合防治恶性肿瘤。

中图分类号:

R735.3

基金项目:

★湖南省自然科学基金项目(2022JJ30362);湖南中医药大学研究生创新课题资助项目(2022CX185)。


Potential molecular mechanisms of Yiqi Tiaofu decoction in treating colorectal cancer based on bioinformatics and molecular docking studies
Author:
Affiliation:

1.Hunan Cancer Hospital, Changsha, 410013, Hunan, China;2.Hunan University of Chinese Medicine, Changsha, 410208, Hunan, China;3.Hunan Academy of Chinese Medicine, Changsha, 410006, Hunan, China

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    摘要:

    目的 基于生物信息学和分子对接技术分析益气调腑汤治疗大肠癌(CRC)的物质基础及潜在作用机制。方法 利用TCMSP、BATMAN-TCM数据库筛选益气调腑汤的活性成分及药物潜在靶点,应用GeneCards、PharmGKB、TTD、DrugBank平台检索CRC的疾病靶点,采用Cytoscape 3.8.0软件构建“成分-靶点”网络图,运行STRING平台进行蛋白质-蛋白质相互作用(PPI)分析,运用R语言数据包进行基因本体(GO)功能富集分析与京都基因与基因组百科全书(KEGG)信号通路富集分析,预测其作用机制,最后运用AutoDock Vina和PyMol软件对益气调腑汤的关键活性成分与PPI中的核心蛋白进行分子对接验证。结果 共筛选益气调腑汤有效成分226种,涉及靶标735个。“药物-成分-靶点”图中筛选出关键活性化合物281个,其PPI网络主要涉及STAT3、SRC、JUN、ESR1、TP53、MAPK3、MAPK1、RELA、FOS、MYC等核心蛋白,GO及KEGG富集分析结果显示,益气调腑汤干预CRC主要涉及异种生物刺激反应、营养水平反应、氧化应激反应、脂多糖反应等多种生物学途径及IL-17、TNF、HIF-1、P53等相关信号通路。分子对接验证提示,槲皮素与核心靶蛋白MAPK3结合情况最佳,MAPK3是益气调腑汤关键化学成分结合活性最高的靶蛋白。结论 益气调腑汤中槲皮素、木犀草素、山柰酚、柚皮素、川芷素、金合欢素、甘草査尔酮A、异鼠李素、3-甲氧基光甘草定等多种关键有效成分可作用于STAT3、SRC、JUN、ESR1、TP53、MAPK3、MAPK1、RELA、FOS、MYC等多种核心靶蛋白,发挥干预CRC的药理作用。

    Abstract:

    Objective To analyze the material basis and potential mechanism of Yiqi Tiaofu decoction in the treatment of colorectal cancer (CRC) on the base of network pharmacology and molecular docking technology.Methods TCMSP and BATMAN-TCM databases were used to screen the active ingredients and potential targets of Yiqi Tiaofu decoction, while GeneCards, PharmGKB, TTD, and DrugBank platforms were used to retrieve the disease targets of CRC. The "component-target" network diagram was constructed using Cytoscape3.8.0 software, and the protein-protein interaction (PPI) analysis was performed using the STRING platform. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomics (KEGG) enrichment analyses were conducted using R language data packages to predict its mechanism of action. Finally, the key active ingredients in Yiqi Tiaofu sdecoction and the core proteins in PPI were docked using AutoDock Vina and PyMol software for molecular validation.Results A total of 226 effective ingredients of Yiqi Tiaofu decoction were screened, involving 735 targets. In the "drug-component-target" diagram, 281 key active compounds were selected, and the PPI network they intervened in mainly involved core proteins such as STAT3, SRC, JUN, ESR1, TP53, MAPK3, MAPK1, RELA, FOS, and MYC. The results of GO and KEGG enrichment analyses showed that Yiqi Tiaofu decoction mainly intervened in various biological pathways such as xenobiotic stimulus response, nutrient level response, oxidative stress response, and lipopolysaccharide response, as well as related pathways such as the IL-17 signaling pathway, TNF signaling pathway, HIF-1 signaling pathway, and P53 signaling pathway in the treatment of chronic CRC. Molecular docking validation showed that quercetin had the best binding with the core target protein MAPK3, which was the target protein with the highest binding activity to the key chemical components of Yiqi Tiaofu Decoction.Conclusion Quercetin, luteolin, kaempferol, naringenin, nobiletin, acacetin, licochalcone A, isorhamnetin, 3'-methoxyglabridin and other key active ingredients in Yiqi Tiaofu decoction may act on STAT3, SRC, JUN, ESR1, TP53, MAPK3, MAPK1, RELA, FOS, MYC and other core target proteins, to exert pharmacological effects on CRC.

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李显晶,宋程,王淳,姚昆鹏,唐蔚,彭巍.基于生物信息学及分子对接研究益气调腑汤治疗大肠癌的潜在分子机制[J].肿瘤药学,2024,14(5):560-568 ( in Chinese)

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